wpler

<a href="https://www.wpler.com/linkmanager-fur-multisites/" rel="nofollow ugc">Deutsche Beschreibung des Plugins</a>
You run a Multisite Blogsystem with open registration for users to add own blogs and their can using a theme by 
different installed themes, but you want to show a link into the footers of the themes but only once time and for 
every blog another one?
With this plugin you can manage your outgoing links into the themes by a shortcode/function for every blog. You can 
set for every link the target, relation (Attribute rel), linktext and -title and the target url. Also you can set more 
than one link for a blog.
For output you can use a shortcode or a function . This function get the links 
for the current blog-id and printed this, if links are available.
All options/links can set by network admin only. The outputs needs no capability.

WPMU LinkManager

Manage your Themes footer links for every blog into a multisite includes with conditional tags.

Otto Kekäläinen

Viljami Kuosmanen

This plugin is useful if you have want to enable your users to insert custom CSS or add custom headers or some JavaScript into the site without having to edit any theme files. Unlike similar header/footer plugins, this plugin by design does not allow to insert PHP code and does not contain any evil eval() calls.
The plugin is safe to use in WordPress Network installations, where site admins are not supposed to have PHP execution access but any HTML/CSS/JS code is safe to accept.
Simple Header Footer HTML is made by Seravo.com. Seravo provides Premium Hosting and Upkeep service for WordPress.
Contributing
Source available at https://github.com/Seravo/wp-simple-header-footer-html

Simple Header Footer HTML

A simple plugin for injecting HTML into various places in your WordPress theme output.

WPMU LinkManager vs Simple Header Footer HTML